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A BAC-based, Integrated Physical and Genetic Map of chicken

We, in collaboration with Dr. Jerry Dodgson, Michigan State University, have developed a genome-wide, BAC-based, integrated genetic and physical map of the chicken genome from three complementary BAC libraries (BAC & EST Unigene Resources) of the chicken Jungle fowl. This project was/is supported by grants from the USDA/CSREES–National Research Initiative (Project numbers: 99-35205-8566 and 2001-52100-11225). 

The BACs are cloned in pBeloBAC11 and its derivative pECBAC1 and are suited for large-scale genome sequencing because of their small vector size (7.5 kb).

 

Map Summary

Contigs in # of clones

Date

Clone

Cov

(1 x)

Marker

Total

Mb

Single

Contig

>100

100:51

50:26

25:10

9:3

2

08/02

57269

8.2

0

1772

10314

5543

0

24

209

1174

2880

1256

09/02

57269

8.2

0

1683

10405

4671

0

39

327

1286

1773

1241

11/02

57269

8.2

310

1473

10346

2937

19

103

380

932

1407

96
12/02 57269

8.2

310

 1452 9656 2496 24 150 429 737 1009 147
06/03 58079

8.3

367

 1510 6830 2331 30 206 476 603 812 204

 

To access all BAC fingerprints and conduct e-chromosome walking, or build overlapping clone path tiles by yourself, starting from a particular clone, click:
                            Chicken Clone -> FPC Hitting Tool
To search the contig containing a particular clone, click:
                            Chicken Clone -> Contig
To access all contigs based on Contig No., click:
                           Chicken Contig No. -> Contig Map

To access the contigs anchored to the genetic map from a particular DNA marker, click:
                            Chicken Integrated Physical and Genetic Map
To access all positive clones of a DNA marker or EST and the contig(s) containing them, click:

                         

 

 

Chicken Marker/EST -> Positive Clones
-> Contig/Fingerprint FPC Hit Matches

To determine the overlapping relationships of a group of selected clones of interest, click:
                             Chicken Clone -> Fingerprint Map
 

 
Last Updated Wednesday October 01, 2003 Questions ? webmaster@hbz.tamu.edu  
 
Copyright © 2002 hbz laboratory all rights reserved.
Norman E. Borlaug Center, College Station, TX77843